Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BLCA rs1913576 chr4:119297789 C/T 1.96E-12 398 17.53 18.15 1.38 KM Plot
BLCA rs1979981 chr5:131601720 G/A 1.12E-6 400 18.62 19.13 14.37 KM Plot
BLCA rs200406241 chr16:70923450 CT/C 2.94E-7 397 17.4 20.5 3.9 KM Plot
BLCA rs2089855 chr5:131573529 A/G 1.78E-5 405 18.05 18.02 13.77 KM Plot
BLCA rs2109588 chr4:58104275 A/G 8.93E-8 405 18.23 13.13 5.17 KM Plot
BLCA rs2136186 chr5:131578265 G/A 1.64E-5 399 21.27 17.17 14.37 KM Plot
BLCA rs2136187 chr5:131577894 T/C 1.87E-5 399 21.32 16.93 14.37 KM Plot
BLCA rs2171247 chr5:131580234 G/T 1.15E-6 401 21.32 18.07 14.18 KM Plot
BLCA rs219437 chr2:33184001 A/G 1.5E-5 401 16.25 20.23 16.17 KM Plot
BLCA rs2396982 chr5:3504934 G/A 9.98E-6 405 17.4 19.67 4.37 KM Plot
BLCA rs2631362 chr5:131707293 A/G 3.37E-6 405 15.8 19.07 20.1 KM Plot
BLCA rs2637640 chr10:133942568 T/C 1.46E-5 395 11.47 17.87 18.83 KM Plot
BLCA rs270621 chr5:131605821 C/A 1.05E-5 398 17.97 19.45 14.27 KM Plot
BLCA rs272872 chr5:131675864 C/T 2.01E-5 405 16.2 17.77 26.13 KM Plot
BLCA rs2779322 chr10:36987011 G/A 1.28E-9 400 17.57 18.22 3.6 KM Plot